Any ideas on what I should look for or what direction to take this in?
Dialing up our Mustang expert and very familiar with those transmissions @Mod_Man
Not going to be much you can do. Ford is going to say it is within spec, and the MT-82 is a piece of junk right out of the box. Now that you have it, may as well learn to live with it. Maintain it as best you can and realize you'll be living with issues as long as you own it. The only solution would be to swap to a Tremec unit, but then you still have the plasma lined cylinder wall issues in the motor.
The Mustangs just have way too many issues right now. I've owned two. They are fun to drive, but the constant issues get old real fast.
You could try changing the manual trans fluid.
@mod_man I was able to get the noise on camera last night. https://youtu.be/vLW6s73X4R4 Definitely sounds like excessive tranny whine to me... what do you think? Like you said I know I won't accomplish anything by sharing this with Ford or anyone, but I just want other people to tell me my ears aren't crazy.... it's really loud for a street car.
Yep.....that's what both mine did. I too found it irritating but Ford said it is normal.
@Mod_Man Do you think changing out the transmission fluid is worth a shot like @toyotagrl suggested? Also what do you think of the Mach 1 that has a Tremec, but obviously still the Coyote Gen 3 with those Plasma lined Cylinders?
I'm done with Ford and Mustangs at this point. $50k for a GT is a joke, and the Mach is marked up even more. You can change the fluid but I didn't have a bit of luck with mine. It can't hurt though.